{ "openapi": "3.0.0", "info": { "title": "MolViewSpec Node Schema OpenAPI", "version": "1.2" }, "paths": {}, "components": { "schemas": { "AngleMeasurementParams": { "title": "AngleMeasurementParams", "type": "object", "properties": { "start": { "title": "Start", "description": "Start of this tube.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "end": { "title": "End", "description": "End of this tube.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "radius": { "title": "Radius", "description": "Tube radius (in Angstroms).", "type": "number" }, "dash_length": { "title": "Dash Length", "description": "Length of each dash.", "type": "number" }, "color": { "title": "Color", "description": "Color of the tube. If not specified, the primitives group color is used.", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] }, "kind": { "title": "Kind", "default": "angle_measurement", "enum": [ "angle_measurement" ], "type": "string" }, "a": { "title": "A", "description": "Point A.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "b": { "title": "B", "description": "Point B.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "c": { "title": "C", "description": "Point C.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "label_template": { "title": "Label Template", "description": "Template used to construct the label. Use {{angle}} as placeholder for the value.", "type": "string" }, "label_size": { "title": "Label Size", "description": "Size of the label. Auto scales it by the average magnitude of (b - a) and (c - b).", "anyOf": [ { "type": "number" }, { "enum": [ "auto" ], "type": "string" } ] }, "label_auto_size_scale": { "title": "Label Auto Size Scale", "description": "Scaling factor for auto size.", "type": "number" }, "label_auto_size_min": { "title": "Label Auto Size Min", "description": "Minimum size for auto size.", "type": "number" }, "label_color": { "title": "Label Color", "description": "Color of the label.", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] }, "show_vector": { "title": "Show Vector", "description": "Draw vectors between (a, b) and (b, c).", "type": "boolean" }, "vector_color": { "title": "Vector Color", "description": "Color of the vectors.", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] }, "show_section": { "title": "Show Section", "description": "Draw a filled circle section representing the angle.", "type": "boolean" }, "section_color": { "title": "Section Color", "description": "Color of the angle section. If not specified, the primitives group color is used.", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] }, "section_radius": { "title": "Section Radius", "description": "Radius of the angle section. In angstroms.", "type": "number" }, "section_radius_scale": { "title": "Section Radius Scale", "description": "Factor to scale the radius of the angle section. Ignored if section_radius is set.", "type": "number" } }, "required": [ "start", "end", "a", "b", "c" ], "definitions": { "ComponentExpression": { "title": "ComponentExpression", "description": "Component expressions are used to make selections.", "type": "object", "properties": { "label_entity_id": { "title": "Label Entity Id", "description": "Select an entity by its identifier", "type": "string" }, "label_asym_id": { "title": "Label Asym Id", "description": "Select a chain using its standard, programmatically-assigned identifier", "type": "string" }, "auth_asym_id": { "title": "Auth Asym Id", "description": "Select a chain using its legacy, author-assigned identifier", "type": "string" }, "label_seq_id": { "title": "Label Seq Id", "description": "Select a residue by its standard, programmatically-assigned sequence position", "type": "integer" }, "auth_seq_id": { "title": "Auth Seq Id", "description": "Select a residue by its legacy, author-assigned sequence position", "type": "integer" }, "pdbx_PDB_ins_code": { "title": "Pdbx Pdb Ins Code", "description": "Optional legacy insertion code, only relevant for `auth_seq_id`", "type": "string" }, "beg_label_seq_id": { "title": "Beg Label Seq Id", "description": "Defines a consecutive range of residues when combined with `end_label_seq_id`.", "type": "integer" }, "end_label_seq_id": { "title": "End Label Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_label_seq_id`. End indices are inclusive.", "type": "integer" }, "beg_auth_seq_id": { "title": "Beg Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `end_auth_seq_id`.", "type": "integer" }, "end_auth_seq_id": { "title": "End Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_auth_seq_id`. End indices are inclusive.", "type": "integer" }, "residue_index": { "title": "Residue Index", "description": "0-based residue index in the source file", "type": "integer" }, "label_atom_id": { "title": "Label Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.label_atom_id`)", "type": "string" }, "auth_atom_id": { "title": "Auth Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.auth_atom_id`)", "type": "string" }, "type_symbol": { "title": "Type Symbol", "description": "Element symbol like 'H', 'HE', 'LI', 'BE' (`_atom_site.type_symbol`)", "type": "string" }, "atom_id": { "title": "Atom Id", "description": "Unique atom identifier (`_atom_site.id`)", "type": "integer" }, "atom_index": { "title": "Atom Index", "description": "0-based atom index in the source file", "type": "integer" } } }, "PrimitiveComponentExpressions": { "title": "PrimitiveComponentExpressions", "type": "object", "properties": { "structure_ref": { "title": "Structure Ref", "description": "Reference to a structure node to apply this expresion to. If undefined, get the structure implicitly from the tree.", "type": "string" }, "expression_schema": { "title": "Expression Schema", "description": "Schema the expressions follow, used for optimization of structure query resolution.", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" }, "expressions": { "title": "Expressions", "description": "Expression refencing elements froms the structure_ref.", "type": "array", "items": { "$ref": "#/definitions/ComponentExpression" } } }, "required": [ "expressions" ] } } }, "ArrowParams": { "title": "ArrowParams", "type": "object", "properties": { "kind": { "title": "Kind", "default": "arrow", "enum": [ "arrow" ], "type": "string" }, "start": { "title": "Start", "description": "Start of this arrow.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "end": { "title": "End", "description": "End of this arrow.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "direction": { "title": "Direction", "description": "If specified, the endpoint is computed as start + direction.", "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "anyOf": [ { "type": "integer" }, { "type": "number" } ] }, { "anyOf": [ { "type": "integer" }, { "type": "number" } ] }, { "anyOf": [ { "type": "integer" }, { "type": "number" } ] } ] }, "length": { "title": "Length", "description": "Length of the arrow. If unset, the distance between start and end is used.", "type": "number" }, "show_start_cap": { "title": "Show Start Cap", "description": "Draw a cap at the start of the arrow.", "type": "boolean" }, "start_cap_length": { "title": "Start Cap Length", "description": "Length of the start cap.", "type": "number" }, "start_cap_radius": { "title": "Start Cap Radius", "description": "Radius of the start cap.", "type": "number" }, "show_end_cap": { "title": "Show End Cap", "description": "Draw a cap at the end of the arrow.", "type": "boolean" }, "end_cap_length": { "title": "End Cap Length", "description": "Length of the end cap.", "type": "number" }, "end_cap_radius": { "title": "End Cap Radius", "description": "Radius of the end cap.", "type": "number" }, "show_tube": { "title": "Show Tube", "description": "Draw a tube between the start and end of the arrow.", "type": "boolean" }, "tube_radius": { "title": "Tube Radius", "description": "Tube radius (in Angstroms).", "type": "number" }, "tube_dash_length": { "title": "Tube Dash Length", "description": "Length of each dash.", "type": "number" }, "color": { "title": "Color", "description": "Color of the arrow. If not specified, the primitives group color is used.", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] }, "tooltip": { "title": "Tooltip", "description": "Tooltip to show when hovering on the arrow.", "type": "string" } }, "required": [ "start" ], "definitions": { "ComponentExpression": { "title": "ComponentExpression", "description": "Component expressions are used to make selections.", "type": "object", "properties": { "label_entity_id": { "title": "Label Entity Id", "description": "Select an entity by its identifier", "type": "string" }, "label_asym_id": { "title": "Label Asym Id", "description": "Select a chain using its standard, programmatically-assigned identifier", "type": "string" }, "auth_asym_id": { "title": "Auth Asym Id", "description": "Select a chain using its legacy, author-assigned identifier", "type": "string" }, "label_seq_id": { "title": "Label Seq Id", "description": "Select a residue by its standard, programmatically-assigned sequence position", "type": "integer" }, "auth_seq_id": { "title": "Auth Seq Id", "description": "Select a residue by its legacy, author-assigned sequence position", "type": "integer" }, "pdbx_PDB_ins_code": { "title": "Pdbx Pdb Ins Code", "description": "Optional legacy insertion code, only relevant for `auth_seq_id`", "type": "string" }, "beg_label_seq_id": { "title": "Beg Label Seq Id", "description": "Defines a consecutive range of residues when combined with `end_label_seq_id`.", "type": "integer" }, "end_label_seq_id": { "title": "End Label Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_label_seq_id`. End indices are inclusive.", "type": "integer" }, "beg_auth_seq_id": { "title": "Beg Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `end_auth_seq_id`.", "type": "integer" }, "end_auth_seq_id": { "title": "End Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_auth_seq_id`. End indices are inclusive.", "type": "integer" }, "residue_index": { "title": "Residue Index", "description": "0-based residue index in the source file", "type": "integer" }, "label_atom_id": { "title": "Label Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.label_atom_id`)", "type": "string" }, "auth_atom_id": { "title": "Auth Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.auth_atom_id`)", "type": "string" }, "type_symbol": { "title": "Type Symbol", "description": "Element symbol like 'H', 'HE', 'LI', 'BE' (`_atom_site.type_symbol`)", "type": "string" }, "atom_id": { "title": "Atom Id", "description": "Unique atom identifier (`_atom_site.id`)", "type": "integer" }, "atom_index": { "title": "Atom Index", "description": "0-based atom index in the source file", "type": "integer" } } }, "PrimitiveComponentExpressions": { "title": "PrimitiveComponentExpressions", "type": "object", "properties": { "structure_ref": { "title": "Structure Ref", "description": "Reference to a structure node to apply this expresion to. If undefined, get the structure implicitly from the tree.", "type": "string" }, "expression_schema": { "title": "Expression Schema", "description": "Schema the expressions follow, used for optimization of structure query resolution.", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" }, "expressions": { "title": "Expressions", "description": "Expression refencing elements froms the structure_ref.", "type": "array", "items": { "$ref": "#/definitions/ComponentExpression" } } }, "required": [ "expressions" ] } } }, "BallAndStickParams": { "title": "BallAndStickParams", "description": "Representation node, describing how to represent a component.", "type": "object", "properties": { "type": { "title": "Type", "default": "ball_and_stick", "enum": [ "ball_and_stick" ], "type": "string" }, "ignore_hydrogens": { "title": "Ignore Hydrogens", "descripton": "Controls whether hydrogen atoms are drawn.", "type": "boolean" }, "size_factor": { "title": "Size Factor", "description": "Scales the corresponding visuals.", "type": "number" } } }, "BoxParams": { "title": "BoxParams", "type": "object", "properties": { "kind": { "title": "Kind", "default": "box", "enum": [ "box" ], "type": "string" }, "center": { "title": "Center", "description": "The center of the box.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "extent": { "title": "Extent", "description": "The width, the height, and the depth of the box. Added to the bounding box determined by the center.", "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "anyOf": [ { "type": "integer" }, { "type": "number" } ] }, { "anyOf": [ { "type": "integer" }, { "type": "number" } ] }, { "anyOf": [ { "type": "integer" }, { "type": "number" } ] } ] }, "show_faces": { "title": "Show Faces", "description": "Determine whether to render the faces of the box.", "default": true, "type": "boolean" }, "face_color": { "title": "Face Color", "description": "Color of the box faces.", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] }, "show_edges": { "title": "Show Edges", "description": "Determine whether to render the edges of the box.", "default": false, "type": "boolean" }, "edge_radius": { "title": "Edge Radius", "description": "Radius of the box edges. In angstroms.", "default": 0.1, "type": "number" }, "edge_color": { "title": "Edge Color", "description": "Color of the edges.", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] }, "tooltip": { "title": "Tooltip", "description": "Tooltip to show when hovering on the box.", "type": "string" } }, "required": [ "center" ], "definitions": { "ComponentExpression": { "title": "ComponentExpression", "description": "Component expressions are used to make selections.", "type": "object", "properties": { "label_entity_id": { "title": "Label Entity Id", "description": "Select an entity by its identifier", "type": "string" }, "label_asym_id": { "title": "Label Asym Id", "description": "Select a chain using its standard, programmatically-assigned identifier", "type": "string" }, "auth_asym_id": { "title": "Auth Asym Id", "description": "Select a chain using its legacy, author-assigned identifier", "type": "string" }, "label_seq_id": { "title": "Label Seq Id", "description": "Select a residue by its standard, programmatically-assigned sequence position", "type": "integer" }, "auth_seq_id": { "title": "Auth Seq Id", "description": "Select a residue by its legacy, author-assigned sequence position", "type": "integer" }, "pdbx_PDB_ins_code": { "title": "Pdbx Pdb Ins Code", "description": "Optional legacy insertion code, only relevant for `auth_seq_id`", "type": "string" }, "beg_label_seq_id": { "title": "Beg Label Seq Id", "description": "Defines a consecutive range of residues when combined with `end_label_seq_id`.", "type": "integer" }, "end_label_seq_id": { "title": "End Label Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_label_seq_id`. End indices are inclusive.", "type": "integer" }, "beg_auth_seq_id": { "title": "Beg Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `end_auth_seq_id`.", "type": "integer" }, "end_auth_seq_id": { "title": "End Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_auth_seq_id`. End indices are inclusive.", "type": "integer" }, "residue_index": { "title": "Residue Index", "description": "0-based residue index in the source file", "type": "integer" }, "label_atom_id": { "title": "Label Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.label_atom_id`)", "type": "string" }, "auth_atom_id": { "title": "Auth Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.auth_atom_id`)", "type": "string" }, "type_symbol": { "title": "Type Symbol", "description": "Element symbol like 'H', 'HE', 'LI', 'BE' (`_atom_site.type_symbol`)", "type": "string" }, "atom_id": { "title": "Atom Id", "description": "Unique atom identifier (`_atom_site.id`)", "type": "integer" }, "atom_index": { "title": "Atom Index", "description": "0-based atom index in the source file", "type": "integer" } } }, "PrimitiveComponentExpressions": { "title": "PrimitiveComponentExpressions", "type": "object", "properties": { "structure_ref": { "title": "Structure Ref", "description": "Reference to a structure node to apply this expresion to. If undefined, get the structure implicitly from the tree.", "type": "string" }, "expression_schema": { "title": "Expression Schema", "description": "Schema the expressions follow, used for optimization of structure query resolution.", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" }, "expressions": { "title": "Expressions", "description": "Expression refencing elements froms the structure_ref.", "type": "array", "items": { "$ref": "#/definitions/ComponentExpression" } } }, "required": [ "expressions" ] } } }, "CameraParams": { "title": "CameraParams", "description": "Controls the global camera position.", "type": "object", "properties": { "target": { "title": "Target", "description": "What to look at", "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, "position": { "title": "Position", "description": "The position of the camera", "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, "up": { "title": "Up", "description": "Controls the rotation around the vector between target and position", "required": true, "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] } }, "required": [ "target", "position", "up" ] }, "CanvasParams": { "title": "CanvasParams", "description": "Controls global canvas properties.", "type": "object", "properties": { "background_color": { "title": "Background Color", "description": "Background color using SVG color names or RGB hex code", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] } }, "required": [ "background_color" ] }, "CarbohydrateParams": { "title": "CarbohydrateParams", "description": "Representation node, describing how to represent a component.", "type": "object", "properties": { "type": { "title": "Type", "default": "carbohydrate", "enum": [ "carbohydrate" ], "type": "string" }, "size_factor": { "title": "Size Factor", "description": "Scales the corresponding visuals.", "type": "number" } } }, "CartoonParams": { "title": "CartoonParams", "description": "Representation node, describing how to represent a component.", "type": "object", "properties": { "type": { "title": "Type", "default": "cartoon", "enum": [ "cartoon" ], "type": "string" }, "size_factor": { "title": "Size Factor", "description": "Scales the corresponding visuals.", "type": "number" }, "tubular_helices": { "title": "Tubular Helices", "description": "Simplify corkscrew helices to tubes.", "type": "boolean" } } }, "ColorFromSourceParams": { "title": "ColorFromSourceParams", "description": "Color based on a category in the source file.", "type": "object", "properties": { "category_name": { "title": "Category Name", "description": "Category wherein selection is located.", "type": "string" }, "field_name": { "title": "Field Name", "description": "Name of the column in CIF that contains the desired value (color/label/tooltip/component...); the default value is 'color'/'label'/'tooltip'/'component' depending on the node kind", "type": "string" }, "block_header": { "title": "Block Header", "description": "Block name wherein selection is located.", "type": "string" }, "block_index": { "title": "Block Index", "description": "Block index wherein selection is located.", "type": "integer" }, "schema": { "title": "Schema", "description": "granularity/type of the selection", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" } }, "required": [ "category_name", "schema" ] }, "ColorFromUriParams": { "title": "ColorFromUriParams", "description": "Color based on another resource.", "type": "object", "properties": { "uri": { "title": "Uri", "description": "Location of the resource", "type": "string" }, "format": { "title": "Format", "description": "Format of the resource, i.e. 'cif', 'bcif', or 'json'", "enum": [ "cif", "bcif", "json" ], "type": "string" }, "category_name": { "title": "Category Name", "description": "Category wherein selection is located. Only applies when format is 'cif' or 'bcif'.", "type": "string" }, "field_name": { "title": "Field Name", "description": "Name of the column in CIF or field name (key) in JSON that contains the desired value (color/label/tooltip/component...); the default value is 'color'/'label'/'tooltip'/'component' depending on the node kind", "type": "string" }, "block_header": { "title": "Block Header", "description": "Block name wherein selection is located. Only applies when format is 'cif' or 'bcif'.", "type": "string" }, "block_index": { "title": "Block Index", "description": "Block index wherein selection is located. Only applies when format is 'cif' or 'bcif'.", "type": "integer" }, "schema": { "title": "Schema", "description": "granularity/type of the selection", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" } }, "required": [ "uri", "format", "schema" ] }, "ColorInlineParams": { "title": "ColorInlineParams", "description": "Color based on function arguments.", "type": "object", "properties": { "selector": { "title": "Selector", "description": "Describes one or more selections or one of the enumerated selectors.", "anyOf": [ { "enum": [ "all", "polymer", "protein", "nucleic", "branched", "ligand", "ion", "water", "coarse" ], "type": "string" }, { "$ref": "#/definitions/ComponentExpression" }, { "type": "array", "items": { "$ref": "#/definitions/ComponentExpression" } } ] }, "color": { "title": "Color", "description": "Color using SVG color names or RGB hex code", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] } }, "definitions": { "ComponentExpression": { "title": "ComponentExpression", "description": "Component expressions are used to make selections.", "type": "object", "properties": { "label_entity_id": { "title": "Label Entity Id", "description": "Select an entity by its identifier", "type": "string" }, "label_asym_id": { "title": "Label Asym Id", "description": "Select a chain using its standard, programmatically-assigned identifier", "type": "string" }, "auth_asym_id": { "title": "Auth Asym Id", "description": "Select a chain using its legacy, author-assigned identifier", "type": "string" }, "label_seq_id": { "title": "Label Seq Id", "description": "Select a residue by its standard, programmatically-assigned sequence position", "type": "integer" }, "auth_seq_id": { "title": "Auth Seq Id", "description": "Select a residue by its legacy, author-assigned sequence position", "type": "integer" }, "pdbx_PDB_ins_code": { "title": "Pdbx Pdb Ins Code", "description": "Optional legacy insertion code, only relevant for `auth_seq_id`", "type": "string" }, "beg_label_seq_id": { "title": "Beg Label Seq Id", "description": "Defines a consecutive range of residues when combined with `end_label_seq_id`.", "type": "integer" }, "end_label_seq_id": { "title": "End Label Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_label_seq_id`. End indices are inclusive.", "type": "integer" }, "beg_auth_seq_id": { "title": "Beg Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `end_auth_seq_id`.", "type": "integer" }, "end_auth_seq_id": { "title": "End Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_auth_seq_id`. End indices are inclusive.", "type": "integer" }, "residue_index": { "title": "Residue Index", "description": "0-based residue index in the source file", "type": "integer" }, "label_atom_id": { "title": "Label Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.label_atom_id`)", "type": "string" }, "auth_atom_id": { "title": "Auth Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.auth_atom_id`)", "type": "string" }, "type_symbol": { "title": "Type Symbol", "description": "Element symbol like 'H', 'HE', 'LI', 'BE' (`_atom_site.type_symbol`)", "type": "string" }, "atom_id": { "title": "Atom Id", "description": "Unique atom identifier (`_atom_site.id`)", "type": "integer" }, "atom_index": { "title": "Atom Index", "description": "0-based atom index in the source file", "type": "integer" } } } } }, "ComponentExpression": { "title": "ComponentExpression", "description": "Component expressions are used to make selections.", "type": "object", "properties": { "label_entity_id": { "title": "Label Entity Id", "description": "Select an entity by its identifier", "type": "string" }, "label_asym_id": { "title": "Label Asym Id", "description": "Select a chain using its standard, programmatically-assigned identifier", "type": "string" }, "auth_asym_id": { "title": "Auth Asym Id", "description": "Select a chain using its legacy, author-assigned identifier", "type": "string" }, "label_seq_id": { "title": "Label Seq Id", "description": "Select a residue by its standard, programmatically-assigned sequence position", "type": "integer" }, "auth_seq_id": { "title": "Auth Seq Id", "description": "Select a residue by its legacy, author-assigned sequence position", "type": "integer" }, "pdbx_PDB_ins_code": { "title": "Pdbx Pdb Ins Code", "description": "Optional legacy insertion code, only relevant for `auth_seq_id`", "type": "string" }, "beg_label_seq_id": { "title": "Beg Label Seq Id", "description": "Defines a consecutive range of residues when combined with `end_label_seq_id`.", "type": "integer" }, "end_label_seq_id": { "title": "End Label Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_label_seq_id`. End indices are inclusive.", "type": "integer" }, "beg_auth_seq_id": { "title": "Beg Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `end_auth_seq_id`.", "type": "integer" }, "end_auth_seq_id": { "title": "End Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_auth_seq_id`. End indices are inclusive.", "type": "integer" }, "residue_index": { "title": "Residue Index", "description": "0-based residue index in the source file", "type": "integer" }, "label_atom_id": { "title": "Label Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.label_atom_id`)", "type": "string" }, "auth_atom_id": { "title": "Auth Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.auth_atom_id`)", "type": "string" }, "type_symbol": { "title": "Type Symbol", "description": "Element symbol like 'H', 'HE', 'LI', 'BE' (`_atom_site.type_symbol`)", "type": "string" }, "atom_id": { "title": "Atom Id", "description": "Unique atom identifier (`_atom_site.id`)", "type": "integer" }, "atom_index": { "title": "Atom Index", "description": "0-based atom index in the source file", "type": "integer" } } }, "ComponentFromSourceParams": { "title": "ComponentFromSourceParams", "description": "Selection based on a category in the source file.", "type": "object", "properties": { "category_name": { "title": "Category Name", "description": "Category wherein selection is located.", "type": "string" }, "field_name": { "title": "Field Name", "description": "Name of the column in CIF that contains the desired value (color/label/tooltip/component...); the default value is 'color'/'label'/'tooltip'/'component' depending on the node kind", "type": "string" }, "block_header": { "title": "Block Header", "description": "Block name wherein selection is located.", "type": "string" }, "block_index": { "title": "Block Index", "description": "Block index wherein selection is located.", "type": "integer" }, "schema": { "title": "Schema", "description": "granularity/type of the selection", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" }, "field_values": { "title": "Field Values", "description": "Create the component from rows that have any of these values in the field specified by `field_name`. If not provided, create the component from all rows.", "type": "array", "items": { "type": "string" } } }, "required": [ "category_name", "schema" ] }, "ComponentFromUriParams": { "title": "ComponentFromUriParams", "description": "Selection based on another resource.", "type": "object", "properties": { "uri": { "title": "Uri", "description": "Location of the resource", "type": "string" }, "format": { "title": "Format", "description": "Format of the resource, i.e. 'cif', 'bcif', or 'json'", "enum": [ "cif", "bcif", "json" ], "type": "string" }, "category_name": { "title": "Category Name", "description": "Category wherein selection is located. Only applies when format is 'cif' or 'bcif'.", "type": "string" }, "field_name": { "title": "Field Name", "description": "Name of the column in CIF or field name (key) in JSON that contains the desired value (color/label/tooltip/component...); the default value is 'color'/'label'/'tooltip'/'component' depending on the node kind", "type": "string" }, "block_header": { "title": "Block Header", "description": "Block name wherein selection is located. Only applies when format is 'cif' or 'bcif'.", "type": "string" }, "block_index": { "title": "Block Index", "description": "Block index wherein selection is located. Only applies when format is 'cif' or 'bcif'.", "type": "integer" }, "schema": { "title": "Schema", "description": "granularity/type of the selection", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" }, "field_values": { "title": "Field Values", "description": "Create the component from rows that have any of these values in the field specified by `field_name`. If not provided, create the component from all rows.", "type": "array", "items": { "type": "string" } } }, "required": [ "uri", "format", "schema" ] }, "ComponentInlineParams": { "title": "ComponentInlineParams", "description": "Selection based on function arguments.", "type": "object", "properties": { "selector": { "title": "Selector", "description": "Describes one or more selections or one of the enumerated selectors.", "anyOf": [ { "enum": [ "all", "polymer", "protein", "nucleic", "branched", "ligand", "ion", "water", "coarse" ], "type": "string" }, { "$ref": "#/definitions/ComponentExpression" }, { "type": "array", "items": { "$ref": "#/definitions/ComponentExpression" } } ] } }, "definitions": { "ComponentExpression": { "title": "ComponentExpression", "description": "Component expressions are used to make selections.", "type": "object", "properties": { "label_entity_id": { "title": "Label Entity Id", "description": "Select an entity by its identifier", "type": "string" }, "label_asym_id": { "title": "Label Asym Id", "description": "Select a chain using its standard, programmatically-assigned identifier", "type": "string" }, "auth_asym_id": { "title": "Auth Asym Id", "description": "Select a chain using its legacy, author-assigned identifier", "type": "string" }, "label_seq_id": { "title": "Label Seq Id", "description": "Select a residue by its standard, programmatically-assigned sequence position", "type": "integer" }, "auth_seq_id": { "title": "Auth Seq Id", "description": "Select a residue by its legacy, author-assigned sequence position", "type": "integer" }, "pdbx_PDB_ins_code": { "title": "Pdbx Pdb Ins Code", "description": "Optional legacy insertion code, only relevant for `auth_seq_id`", "type": "string" }, "beg_label_seq_id": { "title": "Beg Label Seq Id", "description": "Defines a consecutive range of residues when combined with `end_label_seq_id`.", "type": "integer" }, "end_label_seq_id": { "title": "End Label Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_label_seq_id`. End indices are inclusive.", "type": "integer" }, "beg_auth_seq_id": { "title": "Beg Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `end_auth_seq_id`.", "type": "integer" }, "end_auth_seq_id": { "title": "End Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_auth_seq_id`. End indices are inclusive.", "type": "integer" }, "residue_index": { "title": "Residue Index", "description": "0-based residue index in the source file", "type": "integer" }, "label_atom_id": { "title": "Label Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.label_atom_id`)", "type": "string" }, "auth_atom_id": { "title": "Auth Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.auth_atom_id`)", "type": "string" }, "type_symbol": { "title": "Type Symbol", "description": "Element symbol like 'H', 'HE', 'LI', 'BE' (`_atom_site.type_symbol`)", "type": "string" }, "atom_id": { "title": "Atom Id", "description": "Unique atom identifier (`_atom_site.id`)", "type": "integer" }, "atom_index": { "title": "Atom Index", "description": "0-based atom index in the source file", "type": "integer" } } } } }, "DistanceMeasurementParams": { "title": "DistanceMeasurementParams", "type": "object", "properties": { "start": { "title": "Start", "description": "Start of this tube.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "end": { "title": "End", "description": "End of this tube.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "radius": { "title": "Radius", "description": "Tube radius (in Angstroms).", "type": "number" }, "dash_length": { "title": "Dash Length", "description": "Length of each dash.", "type": "number" }, "color": { "title": "Color", "description": "Color of the tube. If not specified, the primitives group color is used.", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] }, "kind": { "title": "Kind", "default": "distance_measurement", "enum": [ "distance_measurement" ], "type": "string" }, "label_template": { "title": "Label Template", "description": "Template used to construct the label. Use {{distance}} as placeholder for the distance.", "type": "string" }, "label_size": { "title": "Label Size", "description": "Size of the label. Auto scales it by the distance.", "anyOf": [ { "type": "number" }, { "enum": [ "auto" ], "type": "string" } ] }, "label_auto_size_scale": { "title": "Label Auto Size Scale", "description": "Scaling factor for auto size.", "type": "number" }, "label_auto_size_min": { "title": "Label Auto Size Min", "description": "Minimum size for auto size.", "type": "number" }, "label_color": { "title": "Label Color", "description": "Color of the label.", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] } }, "required": [ "start", "end" ], "definitions": { "ComponentExpression": { "title": "ComponentExpression", "description": "Component expressions are used to make selections.", "type": "object", "properties": { "label_entity_id": { "title": "Label Entity Id", "description": "Select an entity by its identifier", "type": "string" }, "label_asym_id": { "title": "Label Asym Id", "description": "Select a chain using its standard, programmatically-assigned identifier", "type": "string" }, "auth_asym_id": { "title": "Auth Asym Id", "description": "Select a chain using its legacy, author-assigned identifier", "type": "string" }, "label_seq_id": { "title": "Label Seq Id", "description": "Select a residue by its standard, programmatically-assigned sequence position", "type": "integer" }, "auth_seq_id": { "title": "Auth Seq Id", "description": "Select a residue by its legacy, author-assigned sequence position", "type": "integer" }, "pdbx_PDB_ins_code": { "title": "Pdbx Pdb Ins Code", "description": "Optional legacy insertion code, only relevant for `auth_seq_id`", "type": "string" }, "beg_label_seq_id": { "title": "Beg Label Seq Id", "description": "Defines a consecutive range of residues when combined with `end_label_seq_id`.", "type": "integer" }, "end_label_seq_id": { "title": "End Label Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_label_seq_id`. End indices are inclusive.", "type": "integer" }, "beg_auth_seq_id": { "title": "Beg Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `end_auth_seq_id`.", "type": "integer" }, "end_auth_seq_id": { "title": "End Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_auth_seq_id`. End indices are inclusive.", "type": "integer" }, "residue_index": { "title": "Residue Index", "description": "0-based residue index in the source file", "type": "integer" }, "label_atom_id": { "title": "Label Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.label_atom_id`)", "type": "string" }, "auth_atom_id": { "title": "Auth Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.auth_atom_id`)", "type": "string" }, "type_symbol": { "title": "Type Symbol", "description": "Element symbol like 'H', 'HE', 'LI', 'BE' (`_atom_site.type_symbol`)", "type": "string" }, "atom_id": { "title": "Atom Id", "description": "Unique atom identifier (`_atom_site.id`)", "type": "integer" }, "atom_index": { "title": "Atom Index", "description": "0-based atom index in the source file", "type": "integer" } } }, "PrimitiveComponentExpressions": { "title": "PrimitiveComponentExpressions", "type": "object", "properties": { "structure_ref": { "title": "Structure Ref", "description": "Reference to a structure node to apply this expresion to. If undefined, get the structure implicitly from the tree.", "type": "string" }, "expression_schema": { "title": "Expression Schema", "description": "Schema the expressions follow, used for optimization of structure query resolution.", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" }, "expressions": { "title": "Expressions", "description": "Expression refencing elements froms the structure_ref.", "type": "array", "items": { "$ref": "#/definitions/ComponentExpression" } } }, "required": [ "expressions" ] } } }, "DownloadParams": { "title": "DownloadParams", "description": "Download node, describing where structure data should be fetched from.", "type": "object", "properties": { "url": { "title": "Url", "description": "URL from which to pull structure data.", "type": "string" } }, "required": [ "url" ] }, "EllipseParams": { "title": "EllipseParams", "type": "object", "properties": { "kind": { "title": "Kind", "default": "ellipse", "enum": [ "ellipse" ], "type": "string" }, "center": { "title": "Center", "description": "The center of the ellipse.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "as_circle": { "title": "As Circle", "description": "If true, ignores radius_minor/magnitude of the minor axis.", "type": "boolean" }, "major_axis": { "title": "Major Axis", "description": "Major axis of this ellipse.", "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "anyOf": [ { "type": "integer" }, { "type": "number" } ] }, { "anyOf": [ { "type": "integer" }, { "type": "number" } ] }, { "anyOf": [ { "type": "integer" }, { "type": "number" } ] } ] }, "minor_axis": { "title": "Minor Axis", "description": "Minor axis of this ellipse.", "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "anyOf": [ { "type": "integer" }, { "type": "number" } ] }, { "anyOf": [ { "type": "integer" }, { "type": "number" } ] }, { "anyOf": [ { "type": "integer" }, { "type": "number" } ] } ] }, "major_axis_endpoint": { "title": "Major Axis Endpoint", "description": "Major axis endpoint. If specified, overrides major axis to be major_axis_endpoint - center.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "minor_axis_endpoint": { "title": "Minor Axis Endpoint", "description": "Minor axis endpoint. If specified, overrides minor axis to be minor_axis_endpoint - center.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "radius_major": { "title": "Radius Major", "description": "Radius of the major axis. If unset, the length of the major axis is used.", "type": "number" }, "radius_minor": { "title": "Radius Minor", "description": "Radius of the minor axis. If unset, the length of the minor axis is used.", "type": "number" }, "theta_start": { "title": "Theta Start", "description": "Start of the arc. In radians.", "type": "number" }, "theta_end": { "title": "Theta End", "description": "End of the arc. In radians.", "type": "number" }, "color": { "title": "Color", "description": "Default color for the ellipse.", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] }, "tooltip": { "title": "Tooltip", "description": "Tooltip to show when hovering on the ellipse.", "type": "string" } }, "required": [ "center" ], "definitions": { "ComponentExpression": { "title": "ComponentExpression", "description": "Component expressions are used to make selections.", "type": "object", "properties": { "label_entity_id": { "title": "Label Entity Id", "description": "Select an entity by its identifier", "type": "string" }, "label_asym_id": { "title": "Label Asym Id", "description": "Select a chain using its standard, programmatically-assigned identifier", "type": "string" }, "auth_asym_id": { "title": "Auth Asym Id", "description": "Select a chain using its legacy, author-assigned identifier", "type": "string" }, "label_seq_id": { "title": "Label Seq Id", "description": "Select a residue by its standard, programmatically-assigned sequence position", "type": "integer" }, "auth_seq_id": { "title": "Auth Seq Id", "description": "Select a residue by its legacy, author-assigned sequence position", "type": "integer" }, "pdbx_PDB_ins_code": { "title": "Pdbx Pdb Ins Code", "description": "Optional legacy insertion code, only relevant for `auth_seq_id`", "type": "string" }, "beg_label_seq_id": { "title": "Beg Label Seq Id", "description": "Defines a consecutive range of residues when combined with `end_label_seq_id`.", "type": "integer" }, "end_label_seq_id": { "title": "End Label Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_label_seq_id`. End indices are inclusive.", "type": "integer" }, "beg_auth_seq_id": { "title": "Beg Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `end_auth_seq_id`.", "type": "integer" }, "end_auth_seq_id": { "title": "End Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_auth_seq_id`. End indices are inclusive.", "type": "integer" }, "residue_index": { "title": "Residue Index", "description": "0-based residue index in the source file", "type": "integer" }, "label_atom_id": { "title": "Label Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.label_atom_id`)", "type": "string" }, "auth_atom_id": { "title": "Auth Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.auth_atom_id`)", "type": "string" }, "type_symbol": { "title": "Type Symbol", "description": "Element symbol like 'H', 'HE', 'LI', 'BE' (`_atom_site.type_symbol`)", "type": "string" }, "atom_id": { "title": "Atom Id", "description": "Unique atom identifier (`_atom_site.id`)", "type": "integer" }, "atom_index": { "title": "Atom Index", "description": "0-based atom index in the source file", "type": "integer" } } }, "PrimitiveComponentExpressions": { "title": "PrimitiveComponentExpressions", "type": "object", "properties": { "structure_ref": { "title": "Structure Ref", "description": "Reference to a structure node to apply this expresion to. If undefined, get the structure implicitly from the tree.", "type": "string" }, "expression_schema": { "title": "Expression Schema", "description": "Schema the expressions follow, used for optimization of structure query resolution.", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" }, "expressions": { "title": "Expressions", "description": "Expression refencing elements froms the structure_ref.", "type": "array", "items": { "$ref": "#/definitions/ComponentExpression" } } }, "required": [ "expressions" ] } } }, "EllipsoidParams": { "title": "EllipsoidParams", "type": "object", "properties": { "kind": { "title": "Kind", "default": "ellipsoid", "enum": [ "ellipsoid" ], "type": "string" }, "center": { "title": "Center", "description": "The center of the ellipsoid.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "major_axis": { "title": "Major Axis", "description": "Major axis of this ellipsoid. Defaults to (1, 0, 0).", "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "anyOf": [ { "type": "integer" }, { "type": "number" } ] }, { "anyOf": [ { "type": "integer" }, { "type": "number" } ] }, { "anyOf": [ { "type": "integer" }, { "type": "number" } ] } ] }, "minor_axis": { "title": "Minor Axis", "description": "Minor axis of this ellipsoid. Defaults to (0, 1, 0).", "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "anyOf": [ { "type": "integer" }, { "type": "number" } ] }, { "anyOf": [ { "type": "integer" }, { "type": "number" } ] }, { "anyOf": [ { "type": "integer" }, { "type": "number" } ] } ] }, "major_axis_endpoint": { "title": "Major Axis Endpoint", "description": "Major axis endpoint. If specified, overrides major axis to be major_axis_endpoint - center.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "minor_axis_endpoint": { "title": "Minor Axis Endpoint", "description": "Minor axis endpoint. If specified, overrides minor axis to be minor_axis_endpoint - center.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "radius": { "title": "Radius", "description": "Radii of the ellipsoid along each axis.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "anyOf": [ { "type": "integer" }, { "type": "number" } ] }, { "anyOf": [ { "type": "integer" }, { "type": "number" } ] }, { "anyOf": [ { "type": "integer" }, { "type": "number" } ] } ] }, { "type": "number" } ] }, "radius_extent": { "title": "Radius Extent", "description": "Added to the radii of the ellipsoid along each axis.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "anyOf": [ { "type": "integer" }, { "type": "number" } ] }, { "anyOf": [ { "type": "integer" }, { "type": "number" } ] }, { "anyOf": [ { "type": "integer" }, { "type": "number" } ] } ] }, { "type": "number" } ] }, "color": { "title": "Color", "description": "Default color for the ellipsoid.", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] }, "tooltip": { "title": "Tooltip", "description": "Tooltip to show when hovering on the ellipsoid.", "type": "string" } }, "required": [ "center" ], "definitions": { "ComponentExpression": { "title": "ComponentExpression", "description": "Component expressions are used to make selections.", "type": "object", "properties": { "label_entity_id": { "title": "Label Entity Id", "description": "Select an entity by its identifier", "type": "string" }, "label_asym_id": { "title": "Label Asym Id", "description": "Select a chain using its standard, programmatically-assigned identifier", "type": "string" }, "auth_asym_id": { "title": "Auth Asym Id", "description": "Select a chain using its legacy, author-assigned identifier", "type": "string" }, "label_seq_id": { "title": "Label Seq Id", "description": "Select a residue by its standard, programmatically-assigned sequence position", "type": "integer" }, "auth_seq_id": { "title": "Auth Seq Id", "description": "Select a residue by its legacy, author-assigned sequence position", "type": "integer" }, "pdbx_PDB_ins_code": { "title": "Pdbx Pdb Ins Code", "description": "Optional legacy insertion code, only relevant for `auth_seq_id`", "type": "string" }, "beg_label_seq_id": { "title": "Beg Label Seq Id", "description": "Defines a consecutive range of residues when combined with `end_label_seq_id`.", "type": "integer" }, "end_label_seq_id": { "title": "End Label Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_label_seq_id`. End indices are inclusive.", "type": "integer" }, "beg_auth_seq_id": { "title": "Beg Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `end_auth_seq_id`.", "type": "integer" }, "end_auth_seq_id": { "title": "End Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_auth_seq_id`. End indices are inclusive.", "type": "integer" }, "residue_index": { "title": "Residue Index", "description": "0-based residue index in the source file", "type": "integer" }, "label_atom_id": { "title": "Label Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.label_atom_id`)", "type": "string" }, "auth_atom_id": { "title": "Auth Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.auth_atom_id`)", "type": "string" }, "type_symbol": { "title": "Type Symbol", "description": "Element symbol like 'H', 'HE', 'LI', 'BE' (`_atom_site.type_symbol`)", "type": "string" }, "atom_id": { "title": "Atom Id", "description": "Unique atom identifier (`_atom_site.id`)", "type": "integer" }, "atom_index": { "title": "Atom Index", "description": "0-based atom index in the source file", "type": "integer" } } }, "PrimitiveComponentExpressions": { "title": "PrimitiveComponentExpressions", "type": "object", "properties": { "structure_ref": { "title": "Structure Ref", "description": "Reference to a structure node to apply this expresion to. If undefined, get the structure implicitly from the tree.", "type": "string" }, "expression_schema": { "title": "Expression Schema", "description": "Schema the expressions follow, used for optimization of structure query resolution.", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" }, "expressions": { "title": "Expressions", "description": "Expression refencing elements froms the structure_ref.", "type": "array", "items": { "$ref": "#/definitions/ComponentExpression" } } }, "required": [ "expressions" ] } } }, "FocusInlineParams": { "title": "FocusInlineParams", "description": "Define the camera focus based on function arguments.", "type": "object", "properties": { "direction": { "title": "Direction", "description": "Direction of the view (vector position -> target)", "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, "up": { "title": "Up", "description": "Controls the rotation around the vector between target and position", "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, "radius": { "title": "Radius", "description": "Radius of the focused sphere (overrides `radius_factor` and `radius_extra`)", "type": "number" }, "radius_factor": { "title": "Radius Factor", "description": "Radius of the focused sphere relative to the radius of parent component (default: 1). Focused radius = component_radius * radius_factor + radius_extent.", "type": "number" }, "radius_extent": { "title": "Radius Extent", "description": "Addition to the radius of the focused sphere, if computed from the radius of parent component (default: 0). Focused radius = component_radius * radius_factor + radius_extent.", "type": "number" } } }, "GlobalMetadata": { "title": "GlobalMetadata", "description": "Top-level metadata for a MVS file (single-state or multi-state).", "type": "object", "properties": { "title": { "title": "Title", "description": "Name of this view(s).", "type": "string" }, "description": { "title": "Description", "description": "Detailed description of this view(s).", "type": "string" }, "description_format": { "title": "Description Format", "description": "Format of `description`. Default is 'markdown'.", "enum": [ "markdown", "plaintext" ], "type": "string" }, "timestamp": { "title": "Timestamp", "description": "Timestamp when this file was exported.", "type": "string" }, "version": { "title": "Version", "description": "Version of MolViewSpec used to write this file.", "type": "string" } } }, "LabelFromSourceParams": { "title": "LabelFromSourceParams", "description": "Label based on a category in the source file.", "type": "object", "properties": { "category_name": { "title": "Category Name", "description": "Category wherein selection is located.", "type": "string" }, "field_name": { "title": "Field Name", "description": "Name of the column in CIF that contains the desired value (color/label/tooltip/component...); the default value is 'color'/'label'/'tooltip'/'component' depending on the node kind", "type": "string" }, "block_header": { "title": "Block Header", "description": "Block name wherein selection is located.", "type": "string" }, "block_index": { "title": "Block Index", "description": "Block index wherein selection is located.", "type": "integer" }, "schema": { "title": "Schema", "description": "granularity/type of the selection", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" } }, "required": [ "category_name", "schema" ] }, "LabelFromUriParams": { "title": "LabelFromUriParams", "description": "Label based on another resource.", "type": "object", "properties": { "uri": { "title": "Uri", "description": "Location of the resource", "type": "string" }, "format": { "title": "Format", "description": "Format of the resource, i.e. 'cif', 'bcif', or 'json'", "enum": [ "cif", "bcif", "json" ], "type": "string" }, "category_name": { "title": "Category Name", "description": "Category wherein selection is located. Only applies when format is 'cif' or 'bcif'.", "type": "string" }, "field_name": { "title": "Field Name", "description": "Name of the column in CIF or field name (key) in JSON that contains the desired value (color/label/tooltip/component...); the default value is 'color'/'label'/'tooltip'/'component' depending on the node kind", "type": "string" }, "block_header": { "title": "Block Header", "description": "Block name wherein selection is located. Only applies when format is 'cif' or 'bcif'.", "type": "string" }, "block_index": { "title": "Block Index", "description": "Block index wherein selection is located. Only applies when format is 'cif' or 'bcif'.", "type": "integer" }, "schema": { "title": "Schema", "description": "granularity/type of the selection", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" } }, "required": [ "uri", "format", "schema" ] }, "LabelInlineParams": { "title": "LabelInlineParams", "description": "Label based on function arguments.", "type": "object", "properties": { "text": { "title": "Text", "description": "Text to show as label", "type": "string" } }, "required": [ "text" ] }, "LinesParams": { "title": "LinesParams", "description": "Low-level, fully customizable lines representation of a shape.", "type": "object", "properties": { "kind": { "title": "Kind", "default": "lines", "enum": [ "lines" ], "type": "string" }, "vertices": { "title": "Vertices", "description": "3N length array of floats with vertex position (x1, y1, z1, ...)", "type": "array", "items": { "type": "number" } }, "indices": { "title": "Indices", "description": "2N length array of indices into vertices that form lines (l1_1, ll1_2, ...)", "type": "array", "items": { "type": "integer" } }, "line_groups": { "title": "Line Groups", "description": "Assign a number to each triangle to group them.", "type": "array", "items": { "type": "integer" } }, "group_colors": { "title": "Group Colors", "description": "Assign a color to each group. If not assigned, default primitives group color is used. Takes precedence over line_colors.", "type": "object", "additionalProperties": { "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] } }, "group_tooltips": { "title": "Group Tooltips", "description": "Assign an optional tooltip to each group.", "type": "object", "additionalProperties": { "type": "string" } }, "group_widths": { "title": "Group Widths", "description": "Assign an optional line width to each group. Take precedence over `width`.", "type": "object", "additionalProperties": { "type": "number" } }, "tooltip": { "title": "Tooltip", "description": "Tooltip shown when hovering over the lines. Assigned group_tooltips take precedence.", "type": "string" }, "width": { "title": "Width", "description": "Line width", "type": "number" }, "color": { "title": "Color", "description": "Default color of the lines.", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] } }, "required": [ "vertices", "indices" ] }, "MeshParams": { "title": "MeshParams", "description": "Low-level, fully customizable mesh representation of a shape.", "type": "object", "properties": { "kind": { "title": "Kind", "default": "mesh", "enum": [ "mesh" ], "type": "string" }, "vertices": { "title": "Vertices", "description": "3N length array of floats with vertex position (x1, y1, z1, ...)", "type": "array", "items": { "type": "number" } }, "indices": { "title": "Indices", "description": "3N length array of indices into vertices that form triangles (t1_1, t1_2, t1_3, ...)", "type": "array", "items": { "type": "integer" } }, "triangle_groups": { "title": "Triangle Groups", "description": "Assign a number to each triangle to group them. If not set, each triangle is considered a separate group.", "type": "array", "items": { "type": "integer" } }, "group_colors": { "title": "Group Colors", "description": "Assign a color to each group. If not assigned, default primitives group color is used.", "type": "object", "additionalProperties": { "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] } }, "group_tooltips": { "title": "Group Tooltips", "description": "Assign an optional tooltip to each group.", "type": "object", "additionalProperties": { "type": "string" } }, "tooltip": { "title": "Tooltip", "description": "Tooltip shown when hovering over the mesh. Assigned group_tooltips take precedence.", "type": "string" }, "color": { "title": "Color", "description": "Default color of the triangles.", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] }, "show_triangles": { "title": "Show Triangles", "description": "Determine whether to render triangles of the mesh", "type": "boolean" }, "show_wireframe": { "title": "Show Wireframe", "description": "Determine whether to render wireframe of the mesh", "type": "boolean" }, "wireframe_width": { "title": "Wireframe Width", "description": "Wireframe line width", "type": "number" }, "wireframe_color": { "title": "Wireframe Color", "description": "Wireframe color, uses triangle/group colors when not set", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] } }, "required": [ "vertices", "indices" ] }, "Node": { "$ref": "#/definitions/Node", "definitions": { "Node": { "title": "Node", "description": "Base impl of all state tree nodes.", "type": "object", "properties": { "kind": { "title": "Kind", "description": "The type of this node.", "enum": [ "root", "camera", "canvas", "color", "color_from_source", "color_from_uri", "component", "component_from_source", "component_from_uri", "download", "focus", "label", "label_from_source", "label_from_uri", "mesh_from_source", "mesh_from_uri", "opacity", "parse", "primitives", "primitives_from_uri", "primitive", "representation", "structure", "tooltip", "tooltip_from_source", "tooltip_from_uri", "transform", "volume", "volume_representation" ], "type": "string" }, "params": { "title": "Params", "description": "Optional params that are needed for this node.", "type": "object" }, "children": { "title": "Children", "description": "Optional collection of nested child nodes.", "type": "array", "items": { "$ref": "#/definitions/Node" } }, "custom": { "title": "Custom", "description": "Custom data to store attached to this node.", "type": "object" }, "ref": { "title": "Ref", "description": "Optional reference that can be used to access this node.", "type": "string" } }, "required": [ "kind" ] } } }, "OpacityInlineParams": { "title": "OpacityInlineParams", "description": "Change the opacity/transparency of a representation based on parameters.", "type": "object", "properties": { "selector": { "title": "Selector", "description": "Describes one or more selections or one of the enumerated selectors.", "anyOf": [ { "enum": [ "all", "polymer", "protein", "nucleic", "branched", "ligand", "ion", "water", "coarse" ], "type": "string" }, { "$ref": "#/definitions/ComponentExpression" }, { "type": "array", "items": { "$ref": "#/definitions/ComponentExpression" } } ] }, "opacity": { "title": "Opacity", "description": "Opacity of a representation. 0.0: fully transparent, 1.0: fully opaque", "type": "number" } }, "required": [ "opacity" ], "definitions": { "ComponentExpression": { "title": "ComponentExpression", "description": "Component expressions are used to make selections.", "type": "object", "properties": { "label_entity_id": { "title": "Label Entity Id", "description": "Select an entity by its identifier", "type": "string" }, "label_asym_id": { "title": "Label Asym Id", "description": "Select a chain using its standard, programmatically-assigned identifier", "type": "string" }, "auth_asym_id": { "title": "Auth Asym Id", "description": "Select a chain using its legacy, author-assigned identifier", "type": "string" }, "label_seq_id": { "title": "Label Seq Id", "description": "Select a residue by its standard, programmatically-assigned sequence position", "type": "integer" }, "auth_seq_id": { "title": "Auth Seq Id", "description": "Select a residue by its legacy, author-assigned sequence position", "type": "integer" }, "pdbx_PDB_ins_code": { "title": "Pdbx Pdb Ins Code", "description": "Optional legacy insertion code, only relevant for `auth_seq_id`", "type": "string" }, "beg_label_seq_id": { "title": "Beg Label Seq Id", "description": "Defines a consecutive range of residues when combined with `end_label_seq_id`.", "type": "integer" }, "end_label_seq_id": { "title": "End Label Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_label_seq_id`. End indices are inclusive.", "type": "integer" }, "beg_auth_seq_id": { "title": "Beg Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `end_auth_seq_id`.", "type": "integer" }, "end_auth_seq_id": { "title": "End Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_auth_seq_id`. End indices are inclusive.", "type": "integer" }, "residue_index": { "title": "Residue Index", "description": "0-based residue index in the source file", "type": "integer" }, "label_atom_id": { "title": "Label Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.label_atom_id`)", "type": "string" }, "auth_atom_id": { "title": "Auth Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.auth_atom_id`)", "type": "string" }, "type_symbol": { "title": "Type Symbol", "description": "Element symbol like 'H', 'HE', 'LI', 'BE' (`_atom_site.type_symbol`)", "type": "string" }, "atom_id": { "title": "Atom Id", "description": "Unique atom identifier (`_atom_site.id`)", "type": "integer" }, "atom_index": { "title": "Atom Index", "description": "0-based atom index in the source file", "type": "integer" } } } } }, "ParseParams": { "title": "ParseParams", "description": "Parse node, describing how to parse downloaded data.", "type": "object", "properties": { "format": { "title": "Format", "description": "The format of the structure data.", "enum": [ "mmcif", "bcif", "pdb", "map" ], "type": "string" } }, "required": [ "format" ] }, "PrimitiveComponentExpressions": { "title": "PrimitiveComponentExpressions", "type": "object", "properties": { "structure_ref": { "title": "Structure Ref", "description": "Reference to a structure node to apply this expresion to. If undefined, get the structure implicitly from the tree.", "type": "string" }, "expression_schema": { "title": "Expression Schema", "description": "Schema the expressions follow, used for optimization of structure query resolution.", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" }, "expressions": { "title": "Expressions", "description": "Expression refencing elements froms the structure_ref.", "type": "array", "items": { "$ref": "#/definitions/ComponentExpression" } } }, "required": [ "expressions" ], "definitions": { "ComponentExpression": { "title": "ComponentExpression", "description": "Component expressions are used to make selections.", "type": "object", "properties": { "label_entity_id": { "title": "Label Entity Id", "description": "Select an entity by its identifier", "type": "string" }, "label_asym_id": { "title": "Label Asym Id", "description": "Select a chain using its standard, programmatically-assigned identifier", "type": "string" }, "auth_asym_id": { "title": "Auth Asym Id", "description": "Select a chain using its legacy, author-assigned identifier", "type": "string" }, "label_seq_id": { "title": "Label Seq Id", "description": "Select a residue by its standard, programmatically-assigned sequence position", "type": "integer" }, "auth_seq_id": { "title": "Auth Seq Id", "description": "Select a residue by its legacy, author-assigned sequence position", "type": "integer" }, "pdbx_PDB_ins_code": { "title": "Pdbx Pdb Ins Code", "description": "Optional legacy insertion code, only relevant for `auth_seq_id`", "type": "string" }, "beg_label_seq_id": { "title": "Beg Label Seq Id", "description": "Defines a consecutive range of residues when combined with `end_label_seq_id`.", "type": "integer" }, "end_label_seq_id": { "title": "End Label Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_label_seq_id`. End indices are inclusive.", "type": "integer" }, "beg_auth_seq_id": { "title": "Beg Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `end_auth_seq_id`.", "type": "integer" }, "end_auth_seq_id": { "title": "End Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_auth_seq_id`. End indices are inclusive.", "type": "integer" }, "residue_index": { "title": "Residue Index", "description": "0-based residue index in the source file", "type": "integer" }, "label_atom_id": { "title": "Label Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.label_atom_id`)", "type": "string" }, "auth_atom_id": { "title": "Auth Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.auth_atom_id`)", "type": "string" }, "type_symbol": { "title": "Type Symbol", "description": "Element symbol like 'H', 'HE', 'LI', 'BE' (`_atom_site.type_symbol`)", "type": "string" }, "atom_id": { "title": "Atom Id", "description": "Unique atom identifier (`_atom_site.id`)", "type": "integer" }, "atom_index": { "title": "Atom Index", "description": "0-based atom index in the source file", "type": "integer" } } } } }, "PrimitiveLabelParams": { "title": "PrimitiveLabelParams", "type": "object", "properties": { "kind": { "title": "Kind", "default": "label", "enum": [ "label" ], "type": "string" }, "position": { "title": "Position", "description": "Position of this label.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "text": { "title": "Text", "default": "The label.", "type": "string" }, "label_size": { "title": "Label Size", "description": "Size of the label.", "type": "number" }, "label_color": { "title": "Label Color", "description": "Color of the label.", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] }, "label_offset": { "title": "Label Offset", "description": "Camera-facing offset to prevent overlap with geometry.", "type": "number" } }, "required": [ "position" ], "definitions": { "ComponentExpression": { "title": "ComponentExpression", "description": "Component expressions are used to make selections.", "type": "object", "properties": { "label_entity_id": { "title": "Label Entity Id", "description": "Select an entity by its identifier", "type": "string" }, "label_asym_id": { "title": "Label Asym Id", "description": "Select a chain using its standard, programmatically-assigned identifier", "type": "string" }, "auth_asym_id": { "title": "Auth Asym Id", "description": "Select a chain using its legacy, author-assigned identifier", "type": "string" }, "label_seq_id": { "title": "Label Seq Id", "description": "Select a residue by its standard, programmatically-assigned sequence position", "type": "integer" }, "auth_seq_id": { "title": "Auth Seq Id", "description": "Select a residue by its legacy, author-assigned sequence position", "type": "integer" }, "pdbx_PDB_ins_code": { "title": "Pdbx Pdb Ins Code", "description": "Optional legacy insertion code, only relevant for `auth_seq_id`", "type": "string" }, "beg_label_seq_id": { "title": "Beg Label Seq Id", "description": "Defines a consecutive range of residues when combined with `end_label_seq_id`.", "type": "integer" }, "end_label_seq_id": { "title": "End Label Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_label_seq_id`. End indices are inclusive.", "type": "integer" }, "beg_auth_seq_id": { "title": "Beg Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `end_auth_seq_id`.", "type": "integer" }, "end_auth_seq_id": { "title": "End Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_auth_seq_id`. End indices are inclusive.", "type": "integer" }, "residue_index": { "title": "Residue Index", "description": "0-based residue index in the source file", "type": "integer" }, "label_atom_id": { "title": "Label Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.label_atom_id`)", "type": "string" }, "auth_atom_id": { "title": "Auth Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.auth_atom_id`)", "type": "string" }, "type_symbol": { "title": "Type Symbol", "description": "Element symbol like 'H', 'HE', 'LI', 'BE' (`_atom_site.type_symbol`)", "type": "string" }, "atom_id": { "title": "Atom Id", "description": "Unique atom identifier (`_atom_site.id`)", "type": "integer" }, "atom_index": { "title": "Atom Index", "description": "0-based atom index in the source file", "type": "integer" } } }, "PrimitiveComponentExpressions": { "title": "PrimitiveComponentExpressions", "type": "object", "properties": { "structure_ref": { "title": "Structure Ref", "description": "Reference to a structure node to apply this expresion to. If undefined, get the structure implicitly from the tree.", "type": "string" }, "expression_schema": { "title": "Expression Schema", "description": "Schema the expressions follow, used for optimization of structure query resolution.", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" }, "expressions": { "title": "Expressions", "description": "Expression refencing elements froms the structure_ref.", "type": "array", "items": { "$ref": "#/definitions/ComponentExpression" } } }, "required": [ "expressions" ] } } }, "PrimitivesFromUriParams": { "title": "PrimitivesFromUriParams", "type": "object", "properties": { "uri": { "title": "Uri", "description": "Location of the resource", "type": "string" }, "format": { "title": "Format", "description": "Format of the data", "enum": [ "mvs-node-json" ], "type": "string" }, "references": { "title": "References", "description": "List of nodes the data are referencing", "type": "array", "items": { "type": "string" } } }, "required": [ "uri", "format" ] }, "PrimitivesParams": { "title": "PrimitivesParams", "type": "object", "properties": { "color": { "title": "Color", "description": "Default color for primitives in this group", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] }, "label_color": { "title": "Label Color", "description": "Default label color for primitives in this group", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] }, "tooltip": { "title": "Tooltip", "description": "Default tooltip for primitives in this group", "type": "string" }, "opacity": { "title": "Opacity", "description": "Opacity of primitive geometry in this group", "type": "number" }, "label_opacity": { "title": "Label Opacity", "description": "Opacity of primitive labels in this group", "type": "number" }, "instances": { "title": "Instances", "description": "Instances of this primitive group defined as 4x4 column major (j * 4 + i indexing) transformation matrices", "type": "array", "items": { "type": "array", "minItems": 16, "maxItems": 16, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" }, { "type": "number" }, { "type": "number" }, { "type": "number" }, { "type": "number" }, { "type": "number" }, { "type": "number" }, { "type": "number" }, { "type": "number" }, { "type": "number" }, { "type": "number" }, { "type": "number" }, { "type": "number" }, { "type": "number" } ] } } } }, "RepresentationParams": { "title": "RepresentationParams", "description": "Representation node, describing how to represent a component.", "type": "object", "properties": { "type": { "title": "Type", "description": "Representation type, i.e. cartoon, ball_and_stick, etc.", "enum": [ "ball_and_stick", "spacefill", "cartoon", "surface", "isosurface", "carbohydrate" ], "type": "string" } }, "required": [ "type" ] }, "Snapshot": { "title": "Snapshot", "description": "Root node of an individual state tree (snapshot) within a collection of snapshots (`States`).", "type": "object", "properties": { "root": { "title": "Root", "description": "Root of the node tree.", "allOf": [ { "$ref": "#/definitions/Node" } ] }, "metadata": { "title": "Metadata", "description": "Associated metadata.", "allOf": [ { "$ref": "#/definitions/SnapshotMetadata" } ] } }, "required": [ "root", "metadata" ], "definitions": { "Node": { "title": "Node", "description": "Base impl of all state tree nodes.", "type": "object", "properties": { "kind": { "title": "Kind", "description": "The type of this node.", "enum": [ "root", "camera", "canvas", "color", "color_from_source", "color_from_uri", "component", "component_from_source", "component_from_uri", "download", "focus", "label", "label_from_source", "label_from_uri", "mesh_from_source", "mesh_from_uri", "opacity", "parse", "primitives", "primitives_from_uri", "primitive", "representation", "structure", "tooltip", "tooltip_from_source", "tooltip_from_uri", "transform", "volume", "volume_representation" ], "type": "string" }, "params": { "title": "Params", "description": "Optional params that are needed for this node.", "type": "object" }, "children": { "title": "Children", "description": "Optional collection of nested child nodes.", "type": "array", "items": { "$ref": "#/definitions/Node" } }, "custom": { "title": "Custom", "description": "Custom data to store attached to this node.", "type": "object" }, "ref": { "title": "Ref", "description": "Optional reference that can be used to access this node.", "type": "string" } }, "required": [ "kind" ] }, "SnapshotMetadata": { "title": "SnapshotMetadata", "description": "Metadata for an individual snapshot.", "type": "object", "properties": { "title": { "title": "Title", "description": "Name of this snapshot.", "type": "string" }, "description": { "title": "Description", "description": "Detailed description of this snapshot.", "type": "string" }, "description_format": { "title": "Description Format", "description": "Format of `description`. Default is 'markdown'.", "enum": [ "markdown", "plaintext" ], "type": "string" }, "key": { "title": "Key", "description": "Unique identifier of this state, useful when working with collections of states.", "type": "string" }, "linger_duration_ms": { "title": "Linger Duration Ms", "description": "Timespan for snapshot.", "type": "integer" }, "transition_duration_ms": { "title": "Transition Duration Ms", "description": "Timespan for the animation to the next snapshot. Leave empty to skip animations.", "type": "integer" } }, "required": [ "linger_duration_ms" ] } } }, "SnapshotMetadata": { "title": "SnapshotMetadata", "description": "Metadata for an individual snapshot.", "type": "object", "properties": { "title": { "title": "Title", "description": "Name of this snapshot.", "type": "string" }, "description": { "title": "Description", "description": "Detailed description of this snapshot.", "type": "string" }, "description_format": { "title": "Description Format", "description": "Format of `description`. Default is 'markdown'.", "enum": [ "markdown", "plaintext" ], "type": "string" }, "key": { "title": "Key", "description": "Unique identifier of this state, useful when working with collections of states.", "type": "string" }, "linger_duration_ms": { "title": "Linger Duration Ms", "description": "Timespan for snapshot.", "type": "integer" }, "transition_duration_ms": { "title": "Transition Duration Ms", "description": "Timespan for the animation to the next snapshot. Leave empty to skip animations.", "type": "integer" } }, "required": [ "linger_duration_ms" ] }, "SpacefillParams": { "title": "SpacefillParams", "description": "Representation node, describing how to represent a component.", "type": "object", "properties": { "type": { "title": "Type", "default": "spacefill", "enum": [ "spacefill" ], "type": "string" }, "ignore_hydrogens": { "title": "Ignore Hydrogens", "descripton": "Controls whether hydrogen atoms are drawn.", "type": "boolean" }, "size_factor": { "title": "Size Factor", "description": "Scales the corresponding visuals.", "type": "number" } } }, "State": { "title": "State", "description": "Root node of a single state tree with metadata.", "type": "object", "properties": { "kind": { "title": "Kind", "description": "Specifies whether this is an individual state or a collection of states.", "default": "single", "const": "single", "enum": [ "single", "multiple" ], "type": "string" }, "root": { "title": "Root", "description": "Root of the node tree.", "allOf": [ { "$ref": "#/definitions/Node" } ] }, "metadata": { "title": "Metadata", "description": "Associated metadata.", "allOf": [ { "$ref": "#/definitions/GlobalMetadata" } ] } }, "required": [ "root", "metadata" ], "definitions": { "Node": { "title": "Node", "description": "Base impl of all state tree nodes.", "type": "object", "properties": { "kind": { "title": "Kind", "description": "The type of this node.", "enum": [ "root", "camera", "canvas", "color", "color_from_source", "color_from_uri", "component", "component_from_source", "component_from_uri", "download", "focus", "label", "label_from_source", "label_from_uri", "mesh_from_source", "mesh_from_uri", "opacity", "parse", "primitives", "primitives_from_uri", "primitive", "representation", "structure", "tooltip", "tooltip_from_source", "tooltip_from_uri", "transform", "volume", "volume_representation" ], "type": "string" }, "params": { "title": "Params", "description": "Optional params that are needed for this node.", "type": "object" }, "children": { "title": "Children", "description": "Optional collection of nested child nodes.", "type": "array", "items": { "$ref": "#/definitions/Node" } }, "custom": { "title": "Custom", "description": "Custom data to store attached to this node.", "type": "object" }, "ref": { "title": "Ref", "description": "Optional reference that can be used to access this node.", "type": "string" } }, "required": [ "kind" ] }, "GlobalMetadata": { "title": "GlobalMetadata", "description": "Top-level metadata for a MVS file (single-state or multi-state).", "type": "object", "properties": { "title": { "title": "Title", "description": "Name of this view(s).", "type": "string" }, "description": { "title": "Description", "description": "Detailed description of this view(s).", "type": "string" }, "description_format": { "title": "Description Format", "description": "Format of `description`. Default is 'markdown'.", "enum": [ "markdown", "plaintext" ], "type": "string" }, "timestamp": { "title": "Timestamp", "description": "Timestamp when this file was exported.", "type": "string" }, "version": { "title": "Version", "description": "Version of MolViewSpec used to write this file.", "type": "string" } } } } }, "States": { "title": "States", "description": "Root node of state descriptions that encompass multiple distinct state trees (snapshots).", "type": "object", "properties": { "kind": { "title": "Kind", "description": "Specifies whether this is an individual state or a collection of states.", "default": "multiple", "const": "multiple", "enum": [ "single", "multiple" ], "type": "string" }, "metadata": { "title": "Metadata", "description": "Associated metadata.", "allOf": [ { "$ref": "#/definitions/GlobalMetadata" } ] }, "snapshots": { "title": "Snapshots", "description": "Ordered collection of individual states.", "type": "array", "items": { "$ref": "#/definitions/Snapshot" } } }, "required": [ "metadata", "snapshots" ], "definitions": { "GlobalMetadata": { "title": "GlobalMetadata", "description": "Top-level metadata for a MVS file (single-state or multi-state).", "type": "object", "properties": { "title": { "title": "Title", "description": "Name of this view(s).", "type": "string" }, "description": { "title": "Description", "description": "Detailed description of this view(s).", "type": "string" }, "description_format": { "title": "Description Format", "description": "Format of `description`. Default is 'markdown'.", "enum": [ "markdown", "plaintext" ], "type": "string" }, "timestamp": { "title": "Timestamp", "description": "Timestamp when this file was exported.", "type": "string" }, "version": { "title": "Version", "description": "Version of MolViewSpec used to write this file.", "type": "string" } } }, "Node": { "title": "Node", "description": "Base impl of all state tree nodes.", "type": "object", "properties": { "kind": { "title": "Kind", "description": "The type of this node.", "enum": [ "root", "camera", "canvas", "color", "color_from_source", "color_from_uri", "component", "component_from_source", "component_from_uri", "download", "focus", "label", "label_from_source", "label_from_uri", "mesh_from_source", "mesh_from_uri", "opacity", "parse", "primitives", "primitives_from_uri", "primitive", "representation", "structure", "tooltip", "tooltip_from_source", "tooltip_from_uri", "transform", "volume", "volume_representation" ], "type": "string" }, "params": { "title": "Params", "description": "Optional params that are needed for this node.", "type": "object" }, "children": { "title": "Children", "description": "Optional collection of nested child nodes.", "type": "array", "items": { "$ref": "#/definitions/Node" } }, "custom": { "title": "Custom", "description": "Custom data to store attached to this node.", "type": "object" }, "ref": { "title": "Ref", "description": "Optional reference that can be used to access this node.", "type": "string" } }, "required": [ "kind" ] }, "SnapshotMetadata": { "title": "SnapshotMetadata", "description": "Metadata for an individual snapshot.", "type": "object", "properties": { "title": { "title": "Title", "description": "Name of this snapshot.", "type": "string" }, "description": { "title": "Description", "description": "Detailed description of this snapshot.", "type": "string" }, "description_format": { "title": "Description Format", "description": "Format of `description`. Default is 'markdown'.", "enum": [ "markdown", "plaintext" ], "type": "string" }, "key": { "title": "Key", "description": "Unique identifier of this state, useful when working with collections of states.", "type": "string" }, "linger_duration_ms": { "title": "Linger Duration Ms", "description": "Timespan for snapshot.", "type": "integer" }, "transition_duration_ms": { "title": "Transition Duration Ms", "description": "Timespan for the animation to the next snapshot. Leave empty to skip animations.", "type": "integer" } }, "required": [ "linger_duration_ms" ] }, "Snapshot": { "title": "Snapshot", "description": "Root node of an individual state tree (snapshot) within a collection of snapshots (`States`).", "type": "object", "properties": { "root": { "title": "Root", "description": "Root of the node tree.", "allOf": [ { "$ref": "#/definitions/Node" } ] }, "metadata": { "title": "Metadata", "description": "Associated metadata.", "allOf": [ { "$ref": "#/definitions/SnapshotMetadata" } ] } }, "required": [ "root", "metadata" ] } } }, "StructureParams": { "title": "StructureParams", "description": "Structure node, describing which type (assembly 1, deposited coordinates, etc.) of the parsed data to create.", "type": "object", "properties": { "type": { "title": "Type", "description": "How to interpret the loaded data", "enum": [ "model", "assembly", "symmetry", "symmetry_mates" ], "type": "string" }, "assembly_id": { "title": "Assembly Id", "description": "Use the name to specify which assembly to load", "type": "string" }, "assembly_index": { "title": "Assembly Index", "description": "0-based assembly index, use this to load the 1st assembly", "type": "integer" }, "model_index": { "title": "Model Index", "description": "0-based model index in case multiple NMR frames are present", "type": "integer" }, "block_index": { "title": "Block Index", "description": "0-based block index in case multiple mmCIF or SDF data blocks are present", "type": "integer" }, "block_header": { "title": "Block Header", "description": "Reference a specific mmCIF or SDF data block by its block header", "type": "string" }, "radius": { "title": "Radius", "description": "Radius around model coordinates when loading symmetry mates", "type": "number" }, "ijk_min": { "title": "Ijk Min", "description": "Bottom-left Miller indices", "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "integer" }, { "type": "integer" }, { "type": "integer" } ] }, "ijk_max": { "title": "Ijk Max", "description": "Top-right Miller indices", "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "integer" }, { "type": "integer" }, { "type": "integer" } ] } }, "required": [ "type" ] }, "SurfaceParams": { "title": "SurfaceParams", "description": "Representation node, describing how to represent a component.", "type": "object", "properties": { "type": { "title": "Type", "default": "surface", "enum": [ "surface" ], "type": "string" }, "ignore_hydrogens": { "title": "Ignore Hydrogens", "descripton": "Controls whether hydrogen atoms are drawn.", "type": "boolean" }, "size_factor": { "title": "Size Factor", "description": "Scales the corresponding visuals.", "type": "number" } } }, "TooltipFromSourceParams": { "title": "TooltipFromSourceParams", "description": "Abstract node that's shared by all selections based on the source file.", "type": "object", "properties": { "category_name": { "title": "Category Name", "description": "Category wherein selection is located.", "type": "string" }, "field_name": { "title": "Field Name", "description": "Name of the column in CIF that contains the desired value (color/label/tooltip/component...); the default value is 'color'/'label'/'tooltip'/'component' depending on the node kind", "type": "string" }, "block_header": { "title": "Block Header", "description": "Block name wherein selection is located.", "type": "string" }, "block_index": { "title": "Block Index", "description": "Block index wherein selection is located.", "type": "integer" }, "schema": { "title": "Schema", "description": "granularity/type of the selection", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" } }, "required": [ "category_name", "schema" ] }, "TooltipFromUriParams": { "title": "TooltipFromUriParams", "description": "Abstract node that's shared by all resource-based selections.", "type": "object", "properties": { "uri": { "title": "Uri", "description": "Location of the resource", "type": "string" }, "format": { "title": "Format", "description": "Format of the resource, i.e. 'cif', 'bcif', or 'json'", "enum": [ "cif", "bcif", "json" ], "type": "string" }, "category_name": { "title": "Category Name", "description": "Category wherein selection is located. Only applies when format is 'cif' or 'bcif'.", "type": "string" }, "field_name": { "title": "Field Name", "description": "Name of the column in CIF or field name (key) in JSON that contains the desired value (color/label/tooltip/component...); the default value is 'color'/'label'/'tooltip'/'component' depending on the node kind", "type": "string" }, "block_header": { "title": "Block Header", "description": "Block name wherein selection is located. Only applies when format is 'cif' or 'bcif'.", "type": "string" }, "block_index": { "title": "Block Index", "description": "Block index wherein selection is located. Only applies when format is 'cif' or 'bcif'.", "type": "integer" }, "schema": { "title": "Schema", "description": "granularity/type of the selection", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" } }, "required": [ "uri", "format", "schema" ] }, "TooltipInlineParams": { "title": "TooltipInlineParams", "type": "object", "properties": { "text": { "title": "Text", "description": "Text to show as tooltip upon hover", "type": "string" } }, "required": [ "text" ] }, "TransformParams": { "title": "TransformParams", "description": "Define a transformation.", "type": "object", "properties": { "rotation": { "title": "Rotation", "description": "9d vector describing the rotation, in a column major (j * 3 + i indexing) format, this is equivalent to Fortran-order in numpy, to be multiplied from the left", "type": "array", "minItems": 9, "maxItems": 9, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" }, { "type": "number" }, { "type": "number" }, { "type": "number" }, { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, "translation": { "title": "Translation", "description": "3d vector describing the translation", "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] } } }, "TubeParams": { "title": "TubeParams", "type": "object", "properties": { "start": { "title": "Start", "description": "Start of this tube.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "end": { "title": "End", "description": "End of this tube.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "radius": { "title": "Radius", "description": "Tube radius (in Angstroms).", "type": "number" }, "dash_length": { "title": "Dash Length", "description": "Length of each dash.", "type": "number" }, "color": { "title": "Color", "description": "Color of the tube. If not specified, the primitives group color is used.", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] }, "kind": { "title": "Kind", "default": "tube", "enum": [ "tube" ], "type": "string" }, "tooltip": { "title": "Tooltip", "description": "Tooltip to show when hovering on the tube.", "type": "string" } }, "required": [ "start", "end" ], "definitions": { "ComponentExpression": { "title": "ComponentExpression", "description": "Component expressions are used to make selections.", "type": "object", "properties": { "label_entity_id": { "title": "Label Entity Id", "description": "Select an entity by its identifier", "type": "string" }, "label_asym_id": { "title": "Label Asym Id", "description": "Select a chain using its standard, programmatically-assigned identifier", "type": "string" }, "auth_asym_id": { "title": "Auth Asym Id", "description": "Select a chain using its legacy, author-assigned identifier", "type": "string" }, "label_seq_id": { "title": "Label Seq Id", "description": "Select a residue by its standard, programmatically-assigned sequence position", "type": "integer" }, "auth_seq_id": { "title": "Auth Seq Id", "description": "Select a residue by its legacy, author-assigned sequence position", "type": "integer" }, "pdbx_PDB_ins_code": { "title": "Pdbx Pdb Ins Code", "description": "Optional legacy insertion code, only relevant for `auth_seq_id`", "type": "string" }, "beg_label_seq_id": { "title": "Beg Label Seq Id", "description": "Defines a consecutive range of residues when combined with `end_label_seq_id`.", "type": "integer" }, "end_label_seq_id": { "title": "End Label Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_label_seq_id`. End indices are inclusive.", "type": "integer" }, "beg_auth_seq_id": { "title": "Beg Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `end_auth_seq_id`.", "type": "integer" }, "end_auth_seq_id": { "title": "End Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_auth_seq_id`. End indices are inclusive.", "type": "integer" }, "residue_index": { "title": "Residue Index", "description": "0-based residue index in the source file", "type": "integer" }, "label_atom_id": { "title": "Label Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.label_atom_id`)", "type": "string" }, "auth_atom_id": { "title": "Auth Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.auth_atom_id`)", "type": "string" }, "type_symbol": { "title": "Type Symbol", "description": "Element symbol like 'H', 'HE', 'LI', 'BE' (`_atom_site.type_symbol`)", "type": "string" }, "atom_id": { "title": "Atom Id", "description": "Unique atom identifier (`_atom_site.id`)", "type": "integer" }, "atom_index": { "title": "Atom Index", "description": "0-based atom index in the source file", "type": "integer" } } }, "PrimitiveComponentExpressions": { "title": "PrimitiveComponentExpressions", "type": "object", "properties": { "structure_ref": { "title": "Structure Ref", "description": "Reference to a structure node to apply this expresion to. If undefined, get the structure implicitly from the tree.", "type": "string" }, "expression_schema": { "title": "Expression Schema", "description": "Schema the expressions follow, used for optimization of structure query resolution.", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" }, "expressions": { "title": "Expressions", "description": "Expression refencing elements froms the structure_ref.", "type": "array", "items": { "$ref": "#/definitions/ComponentExpression" } } }, "required": [ "expressions" ] } } }, "VolumeIsoSurfaceParams": { "title": "VolumeIsoSurfaceParams", "description": "Volume isosurface representation.", "type": "object", "properties": { "type": { "title": "Type", "default": "isosurface", "enum": [ "isosurface" ], "type": "string" }, "relative_isovalue": { "title": "Relative Isovalue", "description": "Relative isovalue", "type": "number" }, "absolute_isovalue": { "title": "Absolute Isovalue", "description": "Absolute isovalue. Overrides `relative_isovalue`.", "type": "number" }, "show_wireframe": { "title": "Show Wireframe", "description": "Show mesh wireframe. Defaults to false.", "type": "boolean" }, "show_faces": { "title": "Show Faces", "description": "Show mesh faces. Defaults to true.", "type": "boolean" } } }, "VolumeParams": { "title": "VolumeParams", "description": "Volume node, describing how to load and render volumetric data.", "type": "object", "properties": { "channel_id": { "title": "Channel Id", "description": "ID of the channel to load from the source data.", "type": "string" } } }, "VolumeRepresentationParams": { "title": "VolumeRepresentationParams", "description": "Representation node, describing how to represent a component.", "type": "object", "properties": { "type": { "title": "Type", "description": "Representation type, i.e. isosurface", "enum": [ "isosurface" ], "type": "string" } }, "required": [ "type" ] }, "_DataFromSourceParams": { "title": "_DataFromSourceParams", "description": "Abstract node that's shared by all selections based on the source file.", "type": "object", "properties": { "category_name": { "title": "Category Name", "description": "Category wherein selection is located.", "type": "string" }, "field_name": { "title": "Field Name", "description": "Name of the column in CIF that contains the desired value (color/label/tooltip/component...); the default value is 'color'/'label'/'tooltip'/'component' depending on the node kind", "type": "string" }, "block_header": { "title": "Block Header", "description": "Block name wherein selection is located.", "type": "string" }, "block_index": { "title": "Block Index", "description": "Block index wherein selection is located.", "type": "integer" }, "schema": { "title": "Schema", "description": "granularity/type of the selection", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" } }, "required": [ "category_name", "schema" ] }, "_DataFromUriParams": { "title": "_DataFromUriParams", "description": "Abstract node that's shared by all resource-based selections.", "type": "object", "properties": { "uri": { "title": "Uri", "description": "Location of the resource", "type": "string" }, "format": { "title": "Format", "description": "Format of the resource, i.e. 'cif', 'bcif', or 'json'", "enum": [ "cif", "bcif", "json" ], "type": "string" }, "category_name": { "title": "Category Name", "description": "Category wherein selection is located. Only applies when format is 'cif' or 'bcif'.", "type": "string" }, "field_name": { "title": "Field Name", "description": "Name of the column in CIF or field name (key) in JSON that contains the desired value (color/label/tooltip/component...); the default value is 'color'/'label'/'tooltip'/'component' depending on the node kind", "type": "string" }, "block_header": { "title": "Block Header", "description": "Block name wherein selection is located. Only applies when format is 'cif' or 'bcif'.", "type": "string" }, "block_index": { "title": "Block Index", "description": "Block index wherein selection is located. Only applies when format is 'cif' or 'bcif'.", "type": "integer" }, "schema": { "title": "Schema", "description": "granularity/type of the selection", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" } }, "required": [ "uri", "format", "schema" ] }, "_TubeParamsBase": { "title": "_TubeParamsBase", "type": "object", "properties": { "start": { "title": "Start", "description": "Start of this tube.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "end": { "title": "End", "description": "End of this tube.", "anyOf": [ { "type": "array", "minItems": 3, "maxItems": 3, "items": [ { "type": "number" }, { "type": "number" }, { "type": "number" } ] }, { "$ref": "#/definitions/ComponentExpression" }, { "$ref": "#/definitions/PrimitiveComponentExpressions" } ] }, "radius": { "title": "Radius", "description": "Tube radius (in Angstroms).", "type": "number" }, "dash_length": { "title": "Dash Length", "description": "Length of each dash.", "type": "number" }, "color": { "title": "Color", "description": "Color of the tube. If not specified, the primitives group color is used.", "anyOf": [ { "enum": [ "aliceblue", "antiquewhite", "aqua", "aquamarine", "azure", "beige", "bisque", "black", "blanchedalmond", "blue", "blueviolet", "brown", "burlywood", "cadetblue", "chartreuse", "chocolate", "coral", "cornflowerblue", "cornsilk", "crimson", "cyan", "darkblue", "darkcyan", "darkgoldenrod", "darkgray", "darkgreen", "darkgrey", "darkkhaki", "darkmagenta", "darkolivegreen", "darkorange", "darkorchid", "darkred", "darksalmon", "darkseagreen", "darkslateblue", "darkslategray", "darkslategrey", "darkturquoise", "darkviolet", "deeppink", "deepskyblue", "dimgray", "dimgrey", "dodgerblue", "firebrick", "floralwhite", "forestgreen", "fuchsia", "gainsboro", "ghostwhite", "gold", "goldenrod", "gray", "green", "greenyellow", "grey", "honeydew", "hotpink", "indianred", "indigo", "ivory", "khaki", "lavender", "lavenderblush", "lawngreen", "lemonchiffon", "lightblue", "lightcoral", "lightcyan", "lightgoldenrodyellow", "lightgray", "lightgreen", "lightgrey", "lightpink", "lightsalmon", "lightseagreen", "lightskyblue", "lightslategray", "lightslategrey", "lightsteelblue", "lightyellow", "lime", "limegreen", "linen", "magenta", "maroon", "mediumaquamarine", "mediumblue", "mediumorchid", "mediumpurple", "mediumseagreen", "mediumslateblue", "mediumspringgreen", "mediumturquoise", "mediumvioletred", "midnightblue", "mintcream", "mistyrose", "moccasin", "navajowhite", "navy", "oldlace", "olive", "olivedrab", "orange", "orangered", "orchid", "palegoldenrod", "palegreen", "paleturquoise", "palevioletred", "papayawhip", "peachpuff", "peru", "pink", "plum", "powderblue", "purple", "red", "rosybrown", "royalblue", "saddlebrown", "salmon", "sandybrown", "seagreen", "seashell", "sienna", "silver", "skyblue", "slateblue", "slategray", "slategrey", "snow", "springgreen", "steelblue", "tan", "teal", "thistle", "tomato", "turquoise", "violet", "wheat", "white", "whitesmoke", "yellow", "yellowgreen" ], "type": "string" }, { "type": "string" } ] } }, "required": [ "start", "end" ], "definitions": { "ComponentExpression": { "title": "ComponentExpression", "description": "Component expressions are used to make selections.", "type": "object", "properties": { "label_entity_id": { "title": "Label Entity Id", "description": "Select an entity by its identifier", "type": "string" }, "label_asym_id": { "title": "Label Asym Id", "description": "Select a chain using its standard, programmatically-assigned identifier", "type": "string" }, "auth_asym_id": { "title": "Auth Asym Id", "description": "Select a chain using its legacy, author-assigned identifier", "type": "string" }, "label_seq_id": { "title": "Label Seq Id", "description": "Select a residue by its standard, programmatically-assigned sequence position", "type": "integer" }, "auth_seq_id": { "title": "Auth Seq Id", "description": "Select a residue by its legacy, author-assigned sequence position", "type": "integer" }, "pdbx_PDB_ins_code": { "title": "Pdbx Pdb Ins Code", "description": "Optional legacy insertion code, only relevant for `auth_seq_id`", "type": "string" }, "beg_label_seq_id": { "title": "Beg Label Seq Id", "description": "Defines a consecutive range of residues when combined with `end_label_seq_id`.", "type": "integer" }, "end_label_seq_id": { "title": "End Label Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_label_seq_id`. End indices are inclusive.", "type": "integer" }, "beg_auth_seq_id": { "title": "Beg Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `end_auth_seq_id`.", "type": "integer" }, "end_auth_seq_id": { "title": "End Auth Seq Id", "description": "Defines a consecutive range of residues when combined with `beg_auth_seq_id`. End indices are inclusive.", "type": "integer" }, "residue_index": { "title": "Residue Index", "description": "0-based residue index in the source file", "type": "integer" }, "label_atom_id": { "title": "Label Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.label_atom_id`)", "type": "string" }, "auth_atom_id": { "title": "Auth Atom Id", "description": "Atom name like 'CA', 'N', 'O' (`_atom_site.auth_atom_id`)", "type": "string" }, "type_symbol": { "title": "Type Symbol", "description": "Element symbol like 'H', 'HE', 'LI', 'BE' (`_atom_site.type_symbol`)", "type": "string" }, "atom_id": { "title": "Atom Id", "description": "Unique atom identifier (`_atom_site.id`)", "type": "integer" }, "atom_index": { "title": "Atom Index", "description": "0-based atom index in the source file", "type": "integer" } } }, "PrimitiveComponentExpressions": { "title": "PrimitiveComponentExpressions", "type": "object", "properties": { "structure_ref": { "title": "Structure Ref", "description": "Reference to a structure node to apply this expresion to. If undefined, get the structure implicitly from the tree.", "type": "string" }, "expression_schema": { "title": "Expression Schema", "description": "Schema the expressions follow, used for optimization of structure query resolution.", "enum": [ "whole_structure", "entity", "chain", "auth_chain", "residue", "auth_residue", "residue_range", "auth_residue_range", "atom", "auth_atom", "all_atomic" ], "type": "string" }, "expressions": { "title": "Expressions", "description": "Expression refencing elements froms the structure_ref.", "type": "array", "items": { "$ref": "#/definitions/ComponentExpression" } } }, "required": [ "expressions" ] } } }, "Component": { "title": "Component", "description": "Builder step with operations relevant for a particular component.", "type": "object", "properties": {} }, "Download": { "title": "Download", "description": "Builder step with operations needed after downloading structure data.", "type": "object", "properties": {} }, "Parse": { "title": "Parse", "description": "Builder step with operations needed after parsing structure data.", "type": "object", "properties": {} }, "Primitives": { "title": "Primitives", "description": "A collection of primitives (such as spheres, lines, ...) that will be grouped together and can be customized using\noptions.", "type": "object", "properties": {} }, "PrimitivesFromUri": { "title": "PrimitivesFromUri", "description": "A collection of primitives (such as spheres, lines, ...) that will be loaded from provided resource.", "type": "object", "properties": {} }, "Representation": { "title": "Representation", "description": "Builder step with operations relating to particular representations.", "type": "object", "properties": {} }, "Root": { "title": "Root", "description": "The builder for MolViewSpec state descriptions. Provides fine-grained options as well as global properties such as\ncanvas color or camera position and functionality to eventually export this scene.", "type": "object", "properties": {} }, "Structure": { "title": "Structure", "description": "Builder step with operations needed after defining the structure to work with.", "type": "object", "properties": {} }, "Volume": { "title": "Volume", "description": "Internal base node from which all other builder nodes are derived.", "type": "object", "properties": {} }, "VolumeRepresentation": { "title": "VolumeRepresentation", "description": "Builder step with operations relating to particular representations.", "type": "object", "properties": {} }, "_Base": { "title": "_Base", "description": "Internal base node from which all other builder nodes are derived.", "type": "object", "properties": {} } } } }