You can install msaR from CRAN or github:
# CRAN install.packages("msaR") #github devtools::install_github("zachcp/msaR")
This is a basic example which shows you how to solve a common problem:
library(msaR) # read some sequences from a multiple sequence alignment file and display seqfile <- system.file("sequences","AHBA.aln", package="msaR") msaR(seqfile, seqlogo = T)
All contributions are welcome! Please feel free to submit a pull request.
If you have any problem or suggestion please open an issue here
This project is licensed under the Boost Software License 1.0.
Permission is hereby granted, free of charge, to any person or organization obtaining a copy of the software and accompanying documentation covered by this license (the “Software”) to use, reproduce, display, distribute, execute, and transmit the Software, and to prepare derivative works of the Software, and to permit third-parties to whom the Software is furnished to do so, all subject to the following:
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